Re: [Freesurfer] surf pial_lgi not created in version 7.1.0

does that file exist?

On 10/8/2020 1:55 PM, Kathy L. Pearson wrote:

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In freesurfer version 5.3.0, I can successfully run: recon-all -autorecon-all -mprage -s $subj -qcache -localGI recon-all -s $subj -qcache -measure pial_lgi

However, the same commands with 7.1.0 give an error after this last of a number of generated statements and no surf/*pial_lgi output: mris_preproc --s 147608 --hemi lh --meas pial_lgi --target fsaverage --out lh.pial_lgi.fsaverage.mgh nsubjects = 1 ERROR: cannot find subjects/147608/surf/lh.pial_lgi

Is a new command needed for version 7.1.0?

Thanks,

Kathy Pearson

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