I'm not sure what you mean. You can just use freeview to load the aseg. Or do you want all the non-STV removed? If that, you can create a mask of STV using mri_binarize and --match run on the aseg.mgz, then use mri_mask aseg.mgz stvmask.mgz aseg-stvonly.mgz
On 05/30/2018 11:56 AM, James Gullickson wrote:
All,
Is there any way to graphically visualize the segmentations for SupraTentorialVol and SupraTentorialVolNotVent, for example in freeview or tkmedit? Based on the descriptions I have read for the supratentorial values, I want to use them for an analysis. However, I would like to visualize them in my data set for QA purposes to ensure they are capturing what I think they are capturing.
Thanks,
James
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer