External Email - Use Caution
Thank you Dear Douglas
Ramesh
On Mon, Jan 6, 2025 at 7:46 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
You have to pass it the name of the subject with the --s flag. The subject name is that produced by recon-all -s subject ...
On 1/4/2025 7:30 AM, Ramesh Babu wrote:
External Email - Use CautionHello,
I want to register JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz with local subject space. For this, I want to generate a registration.dat file which will be used for registration with local subject image. But I am facing an issue which I pasted below.
echo $SUBJECTS_DIR /usr/local/freesurfer/subjects
bbregister --ss sample-001.mgz --mov /usr/local/fsl/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz --reg registration_matrix.dat --init-fsl --dti ERROR: Flag --ss unrecognized. --ss sample-001.mgz --mov /usr/local/fsl/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz --reg registration_matrix.dat --init-fsl --dti
I tried with -s flag, but still the same error. Could you please provide me a solution?
Regards Ramesh
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1h3J95fBMLp4Ur5bBSEgZ2oPH7TuAjBROJH6JSCoQblCY-g... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1642FES_O08im1g1h0GI6dAbDSO_wqx4elKFDMOaFzEbXb7... < https://secure-web.cisco.com/1642FES_O08im1g1h0GI6dAbDSO_wqx4elKFDMOaFzEbXb7... .