This is very neat. Thank you everyone for your responses!
Vy T.U. Dinh Research Assistant, Neurological Sciences Rush University Medical Center Phone: (312) 563-3853 Fax: (312) 563-4660 Email: Vy_dinh@rush.edu
________________________________________ From: Allison Player [astevens@nmr.mgh.harvard.edu] Sent: Thursday, October 13, 2011 2:10 PM To: Douglas N Greve Cc: Vy Dinh; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Automatic corrections log/diary and questions about Tkmedit color options
I believe if you go to the View menu you can select "Edited voxels" which will show what you edited in that session in blue.
If you run: recon-all -show-edits -s subjid
this will show you white matter and brainmask edits you have made I belive.
We don't print a log of the manual correections but that is an interesting idea. Allison
On Thu, 13 Oct 2011, Douglas N Greve wrote:
I don't know about the rest, but you can change the cursor and surface colors with View->Configure
Vy Dinh wrote:
Dear Experts,
Does Freesurfer print an automatic log or diary of the manual corrections (to a brainmask) made in Tkmedit?
Also, is there any way that I can change the color of the edited voxels? It would be great to view the edited voxels as anything but black and white (eg dark blue and a bright yellow respectively) when reviewing the corrections. Is it possible to change the color of the crosshair or the surface boundaries? Because the crosshair and the pial surface boundary are both red, it is quite difficult to locate the crosshair when changing the views. I am also concerned that the red/green lines may be an issue for colorblind users.
Best,
Vy T.U. Dinh Research Assistant, Neurological Sciences Rush University Medical Center Phone: (312) 563-3853 Fax: (312) 563-4660 Email: Vy_dinh@rush.edu mailto:Vy_dinh@rush.edu
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