15 Nov
2022
15 Nov
'22
10:11 a.m.
Hi Sarah
I think you didn't give it any flags other than the subject and input. You need to specify -all if you want it to run all the steps it knows how to
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of O'Dor, Sarah,PhD Sent: Tuesday, November 15, 2022 9:31 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] aseg.mgz not created
Good morning, Recon-all finished without error, but no aseg.mgz file was created. I cannot find any errors in the recon-all.log (attached) to indicate what may have happened. Any suggestions on how to troublshoot this? Thank you, Sarah