External Email - Use Caution
Okay, thank you.
On Fri, Jun 21, 2019 at 2:24 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Shrabani
I really don't know - I don't have any experience registering skulls. sorry Bruce
On Fri, 21 Jun 2019, Shrabani Ghosh wrote:
External Email - Use CautionI am using elastix. And I think it does something similar like ANTS. Do
you think I should get the
proper output using elastix?
On Fri, Jun 21, 2019 at 1:01 PM Shrabani Ghosh srbn.ghosh99@gmail.com
wrote:
Okay Thank You for your all the responses.On Fri, Jun 21, 2019 at 12:50 PM Bruce Fischl <
fischl@nmr.mgh.harvard.edu> wrote:
Hi Shrabani you can read about FS on our wiki. We generally require aT1-weighted MRI
as input and build models of lots of things from it (includingskull, which
will be more accurate if you also have a PD or T2-weighted image). cheers Bruce On Fri, 21 Jun 2019, Shrabani Ghosh wrote: > > External Email - Use Caution > > So in which case, freesurfer is applicable. Because I got asuggestion for CT to
CT registration, I > can use freesurfer. > Thanks > > On Fri, Jun 21, 2019 at 12:42 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote: > Hi Shrabani > > no, that's not really what I'm saying. In any case, I'mnot sure
> FreeSurfer is the right tool for you to use for this. > > cheers > Bruce > On Fri, 21 Jun 2019, > Shrabani Ghosh wrote: > > > > > External Email - Use Caution > > > > So, you mean to say that two volumes need to be exactlysame kind and
having same > information? So I > > have generated a skull foramina model(which istriangular mesh) from the
fixed image > volume. Now I > > want to register the model with a general patient datavolume. But mesh
and volume > cannot be > > registered so that I am trying to register the twovolumes so that the
model will warp > on to the > > patient data perfectly. > > > > regards > > Shrabani Ghosh > > > > On Fri, Jun 21, 2019 at 12:06 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: > > not unless you also have an image of the wholebrain. Even then
I'm not > > sure it will do what you want, although I'm stillnot clear on
exactly what > > you are doing. Registering one image of the skullto a model? Why?
> > > > On Fri, 21 Jun > > 2019, Shrabani Ghosh wrote: > > > > > > > > External Email - Use Caution > > > > > > These are skull images of axial representation.Can't I use
freesurfer? > Because here > > interpolation > > > is important. > > > > > > On Fri, Jun 21, 2019 at 11:58 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu> > wrote: > > > Hi Shrabani > > > > > > I'm not even sure what these are imagesof. If you are
looking for > > > general-purpose registration tools you cantry ANTS or
something like > that. > > > > > > cheers > > > Bruce > > > > > > > > > On Fri, 21 Jun 2019, Shrabani > > > Ghosh wrote: > > > > > > > > > > > External Email - UseCaution
> > > > > > > > The fixed volume is my model volume andthe other is a
patient volume > (moving > > )that I > > > want to fit > > > > and to the fixed volume. They aredifferent in size and
they have to > be > > perfectly > > > aligned. Please > > > > guide me on how to do theregistration. 8.png is the
model volume. > > > > 9.png is the patient volume. > > > > 10.png is the outline of their size. thesmaller one is
the moving > image and > > the > > > bigger one is the > > > > fixed image. > > > > > > > > On Fri, Jun 21, 2019 at 10:22 AM BruceFischl
> <fischl@nmr.mgh.harvard.edu> > > wrote: > > > > what kinds of volumes are they andwhy are you
registering them? > > > > cheers > > > > Bruce > > > > On Thu, 20 > > > > Jun 2019, Shrabani Ghosh wrote: > > > > > > > > > > > > > > External Email - UseCaution
> > > > > > > > > > Hi freesurfer, > > > > > I want to do registration on twoimage volumes
nifti file. > What are > > the > > > commands I > > > > have to use to do > > > > > the registration? > > > > > > > > > > Shrabani Ghosh > > > > > > > > >
> > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > >
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