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Thank you so much, Ruopeng. Do you have an estimated timeline for when this option might be done?
Ryan
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ruopeng Wang rpwang@nmr.mgh.harvard.edu Sent: Thursday, November 1, 2018 7:18:34 PM To: Freesurfer support list Subject: Re: [Freesurfer] automating custom color map
I think there is no option to set custom color code for overlay from command-line. I’ll add that option and let you know when it’s ready.
Best, Ruopeng
On Nov 1, 2018, at 4:51 PM, Nillo, Ryan Michael R <RyanMichael.Nillo@ucsf.edumailto:RyanMichael.Nillo@ucsf.edu> wrote:
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Hi Freesurfer Users,
I used linear regression to map regional beta values on the fsaverage surface. I want to use a colormap that goes from blue to gray or gray to red (no cyan and yellow). I've been using a custom colormap shown in example.tiff. I've been making this by going into freeview and adjusting the parameters from the GUI. Is there a way to load this and create a snapshot from the command line? I know you can adjust certain parameters like overlay threshold and change the colormap, but I don't see an option for "custom". The end goal is to make multiple regression models and automate the screenshot process.
Best,
Ryan M Nillo Staff Research Associate I UCSF Department of Radiology and Biomedical Imaging <example.tiff>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer