Hi Matt,
the methodologies are described in those papers. Sorry, I don't think there's any one or two paper summary - it's just too much stuff over the years (topology correction, segmentation, surface analysis, morphing, etc....).
Bruce
On Fri, 12 Sep 2008, Matt Clarkson wrote:
Dear everyone,
Hopefully someone can help me. If I do "recon-all --help" i can see a list of 31 steps for the main cortical thickness pipeline. Does anyone have a list that links each of the 31 steps to the most current methodology paper?
I've been reading most of the methodology papers referenced in the wiki, but the software has clearly evolved over the years, and even though you can read the wiki, and trawl through log files, I want to be absolutely sure that for each step, I know exactly what algorithm is applied. Has anyone gone through this before?
Thanks in advance,
Matt
Matt Clarkson Senior Research Associate Dementia Research Centre UCL Institute Of Neurology Queen Square London WC1N 3BG
m.clarkson@ucl.ac.uk Tel: 08451 555 000 ext. 723653 Fax: 020 7676 2066
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