you'll have to first create a registration file, you can do that with
cd subject/mri tkregister2 --mov orig/001.mgz --targ T1.mgz --regheader --s subject --reg register.dat --noedit
then apply this to the surface with
mri_surf2surf --s $subject --sval-xyz white --hemi lh --reg register.dat orig/001.mgz \ --tval-xyz --tval ./lh.white.001
This creates lh.white.001, and the coordinate will/should be in the "tkregister" coorindates of the 001.mgz space (usually they are in the "tkregister" coords of the T1.mgz space). See https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems?action=AttachFil... for how to get from this space to other spaces.
doug
Seok Lew wrote:
Dear all,
I am trying to transform the reconstructed surface like rh.pial into the original mri's (like 001.mgz) coordinate. I found some matrices in the ./transform directory, but not sure of which one (or a set of matrices) would do the transform?
Seok slew@nmr.mgh.harvard.edu
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