Yep, you can use the dmri_motion command. Run it without any arguments to see usage info. It needs:
* Your original, unprocessed DWIs * b-value table * Output from your FSL eddy correction (*.ecclog from eddy_correct or *.eddy_parameters from eddy)
Hope this helps,
a.y
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Buckless, Colleen" <Buckless@kennedykrieger.orgmailto:Buckless@kennedykrieger.org> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Friday, June 16, 2017 at 10:22 AM To: "'freesurfer@nmr.mgh.harvard.edumailto:'freesurfer@nmr.mgh.harvard.edu'" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] TRACULA: Motion measures only
Hi All, I have already preprocessed data in FSL and only want to use TRACULA to get the motion measures to match subjects based on motion. Is there any way I can get out the motion measures without doing all of the other preprocessing steps in TRACULA? Thanks, Colleen Buckless ________________________________ Disclaimer:
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