Hi all, A couple questions regarding post-surgery scans.
1. Is there a way to run scans of post-surgical brains that takes resections into account and gives more accurate results than "recon-all -all"?
2. Is it possible to obtain resection volumes with FreeSurfer? I tried to do this indirectly by finding the difference between total intracranial volume that FreeSurfer gave for scans pre- and post- surgery. However, I rarely obtained reasonable numbers with this method.
Thanks very much for any advice you can give!