Hi Richard - I'd check your bedpostx output files, run mri_info on them to make sure they have the right number of slices. The monitoring script that produces the "slices processed" messages checks only every once in a while, so you won't see a separate message for each slice.
The warnings from the -path part you can definitely ignore.
Hope this helps, a.y
On Tue, 24 Apr 2012, Richard Binney wrote:
Hi Anastasia,
I ran bedpost directly: bedpostx dmri
It seemed to run fine, not exiting with any errors. the only thing that concerned me was that the last output in the terminal was
50 slices processed [when I have 54] queing post-processing stage
then it exited. It seemed to run rather quicker than I expected and I expected it to at least output "all slices processed" and/or something after queing post
Is there any reason to be concerned?
Furthermore, in running the -path, the terminal window constantly outputting...
ERROR: Degenerate spline segment 58 81 24 56 69 24 ...... ERROR: Degenerate spline segment ......
but it seems to continue on without exiting. Is there any reason to be concerned about this? what doe sit mean?
Thanks for your help
R