Hi Paul,
you will need aseg and maybe more in the -long runs anyway. But if you really want to stop after norm
… -autorecon1 -gcareg -canorm
passing autorecon2 will do the whole block : https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllTableStableV6.0 https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllTableStableV6.0
Best, Martin
On 10. Aug 2018, at 18:01, miracle ozzoude miracooloz@gmail.com wrote:
External Email - Use CautionHello FreeSurfer team,
In order to create the longitudinal base after norm.mgz, Is the command below the right way to end recon-all after creating norm.mgz?
recon-all -s subjectID -autorecon1 -autorecon2 -i T1image -canorm.
Thank you.
Best, Paul _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer