28 May
2023
28 May
'23
1:32 p.m.
External Email - Use Caution
Hi all,
I am running freesurfer 7.3.2 for segmentation of T1 data. It seems like still using the old skull stripping tools by default. How should we change it to using synthstrip? (Question 1)
Also, is it a good idea to also turn on the --no-csf flag for cortex and subcortical segmentation? (Question 2)
If using synthstrip, do we still need the -T2 option for better treatment of dura regions? (Question 3)
Thank you.
Best, Ruifeng