you have to use the output of mri_label2vol in the freeview command
On 5/13/2019 5:02 PM, Sam W. wrote:
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Hi,
After bbregister, I ran mri_label2vol to convert a segmentation file to native functional space
mri_label2vol --seg s01/mri/aseg.mgz --reg reg.dat --subject s01 --o aseg-in-func.nii --temp example_func.nii
Now I would like to check how well the example_func and aseg file align.
I tried this freeview -v s01/example_func.nii s01/aseg.mgz:colormap=lut:reg=reg.dat but it does not result in a good alignment
Best regards, Sam
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