Re: [Freesurfer] Extract the entorhinal cortex as a mask

Hi Erik

yes, you can apply mri_extract_label to the aparc+aseg.mgz to extract EC as a volume mask

cheers Bruce On Tue, 12 Jun 2018, Erik O'Hanlon wrote:

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Hi FS experts ,

I'd like to make masks for the entorhinal cortex to use for tractography. Can you advise what FS tool should be used? I've used the mri_extract_label for my hippocampal masks but not sure what files to use to extract EC ? I'm sure it's straightforward

Thanks for any advice

Best regards

Erik

Erik O'Hanlon Postdoctoral researcher

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