You can use mri_annotation2label to extract a color table from the annotation
On 12/03/2018 07:06 PM, Bruce Fischl wrote:
Hi Stephanie
can you give us some details about how you generated your fine-grained parcellation?
cheers Bruce On Mon, 3 Dec 2018, Winkelbeiner, Stephanie A wrote:
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Hi freesurfer-experts,
I used a customized script that produces a more fine-grained parcellation resulting in an .annot file.
I don’t seem to have a look-up-table (LUT), however.
I tried the following:
- mri_annotation2label à allows me to extract the single labels. But I rather need a .ctab file when I want to read out my values.
- mris_anatomical_stats with the –c flag à to output the colortable as a text file I first need the .ctab file.
Is there a way to get the LUT in a text file or the .ctab file just from the annotation file?
Thanks a lot in advance!
Cheers,
Stephanie
Stephanie Winkelbeiner, MSc
Research Coordinator
Psychiatry Research
Zucker Hillside Hospital
75-59 263 Street
Glen Oaks, NY 11004
Tel: (718) 470-4588
Email: swinkelbei@northwell.edu
Northwell Health
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