Rodrigo,
These appear to be from a NeuroLogica CereTom scanner, and while they appear to be in dicom format, I cannot get mri_convert to recognize them. However, mricro does read them, and can convert them to analyze (which mri_convert can convert to .nii). Converting to analyze loses orientation info though. I can point you at the converted file if you want.
Nick
On Mon, 2009-04-27 at 11:13 -0400, Rodrigo Zepeda wrote:
Hi,
I'm trying to run mri_convert to convert CT dicoms into nifti format but I keep getting the following error:
[multnomah:CT] (nmr-std-env) mri_convert -i 1.2.840.10008.5.1.4.1.22342498128.100.dcm -o ct.nii mri_convert -i 1.2.840.10008.5.1.4.1.22342498128.100.dcm -o ct.nii file not found or unknown file type for file 1.2.840.10008.5.1.4.1.22342498128.100.dcm
I'm running this from /autofs/space/multnomah_002/users/Cashlab/MG13/CT. I think the sources and directory are OK because I ran mri_convert to convert this same subject's MRI into mgz without problems. Is there a problem with the dicoms format then? How can I bypass this?
Thanks!
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