The GSL_DIR and FSL_DIR outputs are no longer displayed (neither are distributed with freesurfer, but FSL will get setup if FSL is installed where FSLDIR is defined). I've updated the wiki to show the proper output.
Do you have X11 installed? Including the X11 updates from Apple? You could also try:
setenv DISPLAY :0.0
Nick
On Fri, 2008-01-25 at 14:55 -0600, Cochrane Jamison wrote:
I have just installed the Mac OS X version 4.0.2 for PowerPC. Everything installed fine, but I have encountered errors beginning when I run the script file. When running the script, I get the following message:
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /applications/freesurfer
FSFAST_HOME /applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /applications/freesurfer/subjects
MNI_DIR /applications/freesurfer/mni
It then goes back to prompt. I was wondering why I was not receiving the following from the setup guide:
GSL_DIR /usr/local/freesurfer/lib/gsl FSL_DIR /usr/local/freesurfer/fsl
I then tried the next step from the guide even though I did not receive the last two lines above. When I tried to run tkmedit, from the freesurfer_home directory, on the bert orig.mgz file, I received this message:
GLUT: Fatal Error in tkmedit.bin: could not open display:
It then goes back to prompt. This is where I stopped and wrote this email. Any help would be great. Thank you in advance.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer