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I hope this is helpful, thank you!
*Franchesca Kuhney, M.A.* *(she/her)* Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607
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On Tue, Jul 13, 2021 at 10:46 PM Iglesias Gonzalez, Juan E. < JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:
Wow that is indeed terrible. Do you think you could send us the same sagittal slice for aseg.mgz, please? Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://secure-web.cisco.com/1eOrMKcIKi9r4lezT1tiAzmIjJEiW01CGTF9VX_A73R5Z9wv... https://secure-web.cisco.com/1c2BH1ZXpGZQe6RsWkBnoebiEpFJWKxz54CoSiUE-3J9UFMrYc70ztsR671EhXvjZpSUjirYplYd8Hvj4oJcaG2Q9A8E0KKy1w0DfWszhcXuY-P7j7OcFocCdSTvO_sdbJZWl9S5FbXzDWaZeAOJ-xX0gFXSzcfRFTPv1LisvRr5QPcSU-y2jpvz4eIDOuCcysVYzRGjXmDwnLp5jfs-Btor77GkXwXhCXSQSK1yyuUfxx3MkAZSenR_tJ9kns1wZ9SG4LJrdXZ9T0QwDr8ZoaQ/https%3A%2F%2Fnam04.safelinks.protection.outlook.com%2F%3Furl%3Dhttp%253A%252F%252Fwww.jeiglesias.com%252F%26data%3D04%257C01%257Cfkuhne2%2540groute.uic.edu%257Cc0b17b2450f14bd2dba308d94679e4c2%257Ce202cd477a564baa99e3e3b71a7c77dd%257C0%257C0%257C637618311616679685%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C1000%26sdata%3DolNzm46i2ac3b5nKAde%252BM0prh4Daf6me38kEeA5bt%252B0%253D%26reserved%3D0
On Jul 13, 2021, at 22:31, Franchesca Kuhney fkuhne2@uic.edu wrote:
External Email - Use CautionHi Juan,
So sorry for the delay. Attached is an example image. Thanks!
Best, Franchesca
*Franchesca Kuhney, M.A.* *(she/her)* Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607
*Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.* *The information included in the email may be confidential and is meant only for the use of the intended recipient.* *If you received this communication in error, please notify the sender immediately and destroy the original information.*
On Fri, Jul 9, 2021 at 1:49 PM Iglesias Gonzalez, Juan E. < JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:
Dear Franchesca, Could you please attach some images illustrating the problem? Cheers, /Eugenio
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On Jul 9, 2021, at 13:06, Franchesca Kuhney fkuhne2@uic.edu wrote:
External Email - Use CautionHello,
I've run into an issue with the longitudinal hippocampus/amygdala segmentation (segmentHA_T1_long.sh). All of the commands ran properly and I got the outputs listed on the FreeSurfer wiki but, upon QAing the segmentations, I realized that a few subjects hippocampal segmentations were a poor fit. It appears that the segmentation includes their parahippocampal gyrus. I'm wondering if you have any recommendations for how to fix these either manually or automatically? Thank you!
Kindly, Franchesca
*Franchesca Kuhney, M.A.* *(she/her)* Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607
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