It should be posted momentarily, sorry for the delay. -Louis
On Thu, 13 Feb 2014, charujing123 wrote:
Hi Bruce, I did try, but I am so sorry that size of the attachment is too big to send in the mail list. All the best. Rujing Zha 2014-02-13
charujing123
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2014-02-13 22:00 主题：Re: {Filename?} Re: Re: [Freesurfer] recon-all CTABreadASCII error 收件人："charujing123"charujing123@163.com 抄送： Hi Rujing can you cc the list so that others can help? thanks Bruce On Thu, 13 Feb 2014, charujing123 wrote:
Warning: This message has had one or more attachments removed (recon-all.cmd). Please read the "NMR-MGH-Attachment-Warning.txt" attachment(s) for more information. Hi Bruce, Some output of recon-all can be got in the attachment. Thanks Bruce. Rujing Zha 2014-02-13 ____________________________________________________________________________ charujing123 ____________________________________________________________________________ 发件人："charujing123"charujing123@163.com 发送时间：2014-02-13 21:48 主题：Re: [Freesurfer] recon-all CTABreadASCII error 收件人："Bruce Fischl"fischl@nmr.mgh.harvard.edu 抄送："freesurfer@nmr.mgh.harvard.edu"freesurfer@nmr.mgh.harvard.edu Hi Bruce, I ran this code succefully last year. But I cannot completely this command in recent days as errors just above. There is nothing change in the server during this time. According this ERROR information, I asked administrator to delete some files in the /tmp folder and change the write access. But it was still report similar error. And I ran this command as root, then it terminated as a similar situation. Thanks Bruce. All the best. Rujing Zha 2014-02-13 ____________________________________________________________________________ charujing123 ____________________________________________________________________________ 发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2014-02-13 21:33 主题：Re: [Freesurfer] recon-all CTABreadASCII error 收件人："charujing123"charujing123@163.com 抄送："freesurfer@nmr.mgh.harvard.edu"freesurfer@nmr.mgh.harvard.edu Hi Rujing do you have write access to /tmp? Or is it full maybe? Bruce On Thu, 13 Feb 2014, charujing123 wrote: > Dear FS experts, > It represents this message in the command window after ran "recon-all > -autorecon-pial -s CON_EIU01 -no-isrunning": > Reading annotation reading colortable from annotation file... > colortable with 36 entries read originally/autofs/space/terrier_001/users /nicks/freesurfer/average/colortable_desikan > _killiany.txt) > CTABwriteFileASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not > open for writing > > Seg base 1000 Permission denied > CTABreadASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not open > file > No such file or directory > ERROR: reading /tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab > Linux centos2 2.6.18-308.20.1.el5xen #1 SMP Tue Nov 13 11:03:56 EST 2012
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> > recon-all -s CON_EIU04 exited with ERRORS at Thu Feb 13 14:01:12 CST 2014 > > Thanks. > All the best. > Rujing Zha > > 2014-02-13 > > _________________________________________________________________________ ___ > charujing123 > > The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline%C2%A0.%C2%A0If%C2%A0the%C2%A0e-mail%C... rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.