Re: [Freesurfer] make_average_subject error: talairach.m3z does not start as 'MNI Transform File'

Thanks for your help.

My command line is make_average_subject --out avgGrp139 --subjects `cat script/subjects.id` --xform talairach.m3z

On Thu, Mar 7, 2013 at 6:15 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:

what was your command line?

On Thu, 7 Mar 2013, Xiaowei Song wrote:

Sorry, I did not make it clear.

...

In make_average_volume.log, the error message is:

1/139 1173622 aseg Sat Feb 23 02:26:02 EST 2013 mri_vol2vol --mov /data/lis9/fs/x/1173622/mri/**aseg.mgz --targ /usr/local/freesurfer/average/**mni305.cor.mgz --xfm /data/lis9/fs/x/1173622/mri/**transforms/talairach.m3z --o /data/lis9/fs/x/avgGrp139/tmp/**make_average_vol-tmp-55832/** seg-1173622.mgh --interp nearest ERROR: /data/lis9/fs/x/1173622/mri/**transforms/talairach.m3z does not start as 'MNI Transform File'/spin1/users/lis9/fs/dcm.**mprage.mgz ERROR: mri_vol2vol failed.

On Thu, Mar 7, 2013 at 5:49 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: sorry, I don't understand. What was the error? I don't see one in this email. Can you send us the actual screen output?

  cheers
  Bruce
  On Thu, 7 Mar 2013, Xiaowei Song wrote:

        This error may come from regio_read_mincxfm function
        in registerio.c.Does
        this mean something wrong in recon-all?

        I forgot to mention that FreeSurfer version is
         freesurfer-Linux-centos4_x86_**64-stable-pub-v5.1.0


        On Thu, Mar 7, 2013 at 5:34 PM, Xiaowei Song
        <dawnwei.song@gmail.com> wrote:
              Hi all,

        Did you encounter the error message talairach.m3z
        does not start as
        'MNI Transform File' when making average of
        subjects?

        I checked all the recon-all.log file and did not
        find error, but when
        running make_average_subject after recon-all, then
        this error shoot.

        To repeat the error message, I tried the following
        command which is
        called by make_average_subject and found all my
        subjects shoot this
        error.

        mri_vol2vol --mov 1173622/mri/aseg.mgz --targ
        /usr/local/freesurfer/average/**mni305.cor.mgz --xfm
         1173622/mri/transforms/**talairach.m3z --o
        /tmp/make_average_vol-tmp-**164320_seg-1173622.mgh
        --interp nearest

        I found another same question asked before, butnoanswer.

https://mail.nmr.**mgh.harvard.edu/pipermail//**freesurfer/2012-May/0https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/0 24 064.html

        Any hint or help will be appreciated. Thank you.

        --
        Xiaowei Song




        --
        Xiaowei Song

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-- Xiaowei Song