Re: [Freesurfer] creating a skull

Also, is there a way to create a skull from a CT scan? ________________________________________ From: Borzello, Mia Sent: Friday, August 31, 2012 12:17 PM To: freesurfer Subject: RE: [Freesurfer] creating a skull

I've been referred to the following link on the freesurfer site to handle this, but is this still current (i.e. is linux still needed to do this?): http://mailman.science.ru.nl/pipermail/fieldtrip/2012-January/004679.html

thanks, m ________________________________________ From: Louis Nicholas Vinke [vinke@nmr.mgh.harvard.edu] Sent: Friday, August 31, 2012 10:29 AM To: Borzello, Mia Cc: freesurfer Subject: Re: [Freesurfer] creating a skull

Hi, You need to add an extension onto the file name, something like brain.mgz or brain.nii. The extension will tell it what format to save the output in. -Louis

On Fri, 31 Aug 2012, Borzello, Mia wrote:

Hi freesurfer family,

I am trying to create the inner skull boundary and ran: mri_watershed -atlas - surf -useSRAS mri.nii brain

However, after it finished running it said it was saving "brain", but "brain" was an unknown file type. Am i supposed to specify that somewhere?

Thanks in advance, m

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