It is just a text file (you can open it with vi or gedit whatever), just add new lines for new labels and make the colors the color you want them to be.\
hth d
On Tue, Mar 1, 2016 at 5:55 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Thank you so much for you response. I should say that I know about what you are saying. My issue is that I have these 4 columns in my LUT file. Why and how can I change the numbers (RGB values) to create new LUT?
Bests, Faezeh
On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
Thank you so much for you descriptions. I checked out the link you just sent me. Because I do not have many experiences working with Freesurfer, I really could not understand about how I can do such this revising in LUT file. Can you explain more about this? I truly appreciate your time and help.
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
I really appreciate you for help me in this process. May you clarify me from which pattern you changed the RGB values for that region? How I can change the coordinates for the others?
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
I should let you know that, it works! It shows paracentral name in tksurfer. So, how I have to revise my .ctab file to get the right result?
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
Thank you for your response. I just used the command you suggested to use by just a change in calling .ctab LUT file. I used the path: 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just calling aparc.annot.a2009s.ctab. It is strange that I created annot file for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: G_and_S_frontomarg! I excluded the part --nhits too. So, what is your opinion?
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
Here is the text format of those files.
Regards, Faezeh Vedaei
On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei faezevedaei@gmail.com wrote: > > Hi > > Thank you so much for your response. I attached here three files > including the command lines, LUT file , and the list of names I want to get > and what the result is actually. I'd appreciate if you look at them and let > me know what is wrong with that. > > Regards, > Faezeh Vedaei > > On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei faezevedaei@gmail.com > wrote: >> >> Hi, >> >> I checked again to arrange the labels in the order of LUT file, but >> the result has not changed. Can you help me more how I can fix this problem? >> Thank you so much for your time and help. >> >> Regards, >> Faezeh Vedaei >> >> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei >> faezevedaei@gmail.com wrote: >>> >>> Hi, >>> >>> Thank you for your response. Yes, you are right. The names come >>> from the color LUT file. But, the issue is that I chose the label files from >>> that LUT file too. It meas the source that I chose the label files from and >>> the source of the region's names in tksurfer are the same. The problem is >>> just I do not have the label's names I merged to create annot file, in the >>> tksurfer GUI. It shows another names of that list! So, what do you think >>> about? What is the problem? >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei >>> faezevedaei@gmail.com wrote: >>>> >>>> Hi Freesurfer experts, >>>> >>>> I have created an annotation file by several label files using >>>> mris_label2annot command in Freesurfer. The problem is that when I open this >>>> annot file in tksurfer and click on colored regions which corresponded to >>>> specific labels I had chosen them, I do not have their name on the vertex >>>> information part at the bottom of tksurfer GUI. It shows very different >>>> names for these regions. May you explains me what is the problem I could not >>>> see the exact region's name as I have them for label files? >>>> >>>> Thanks, >>>> Faezeh Vedaei >>> >>> >> >
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