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Hi,
I am editing about 120 subjects for a research project. In some reconstructions, the grey matter boundary is not recognised, thus Freesurfer classifies it as white matter. I have tried to remove additional pial surface in the area and it gets a bit better. I have also tried to erase the wm that is classified as gm but the results don't change. Using control points is useless since the white matter is classified correct. Is there any way I can edit the subject to get better boundaries for the grey matter?
Thank you for your help in advance.
//Nilab Nasrullah
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