Thank you. I also have one question; it says default is "white" surface, but I want measure cortical thickness. Can I leave white in or do I change --surf to gray for this?
Kind Wishes,
Linn
On Tue, Aug 6, 2013 at 6:50 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Use --annotation aparc.a2009s Run it with --help to see all the options. doug
On 08/06/2013 08:24 AM, Linn Mittlestein wrote:
Hi all,
I bit confused about how to create labels from annotation2label command to create DLPFC. I want make DLPFC label by merging G_frontal_middle.label, S_frontal_inferior.label and S_frontal_middle.label (available in the 2009 atlas). But I only can get annotation2label to work with the other atlas; eg using this command:
mri_annotation2label --subject $subject --hemi rh --outdir ./$subject/label
But I would like 2009 atlas so for example
mri_annotation2label --a2009s --subject $subject --hemi rh --outdir ./subject/label
But this flag doesnt seem to work. Any other suggestions to get the label files (so i can then do mri_mergelabels and Mris_anatomical stats would be very appreciated, I dont think I need use tksurfer, I think mri_annotation2label should work somehow?
Kind Wishes,
Linn
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