External Email - Use Caution
Use the -T2 and -T2pial flags.
Matt.
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Steve Petersen marfneuro@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Sunday, December 4, 2022 at 10:01 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Autorecon-pial with T1w and T2w images
External Email - Use Caution Dear FreeSurfer experts,
After reviewing and manually editing the recon-all outputs in freeview, I'm going to re-run the recon-all command with the autorecon-pial flag. My question is, does the autorecon-pial also take into account the T2w image or does it only consider the T1w image?. In case of not considering both images (T1w and T2w), is there a way to run the autorecon-pial with both images in order to get a more accurate pial surface segmentation?
Thank you very much in advance.
Best regards,
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