Hello Juhyoung,
I noticed from the recon-all.log files that you are using freesurfer v5.2. It was revealed that this version had issues regarding systematic white surface contraction and placement of the pial surface extending too far:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-May/029581.html
I would recommend processing these subjects with version 6.0
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
-Zeke
On 02/06/2017 01:43 AM, Juhyoung Ryu wrote:
Hi FS developers,
I received errors in one of steps in recon-all. I analyzed 111 individual subjects' T1 data using same method, but there are errors in _only 14 subjects._
Below is screenshot image in the end of recon-all.log file. I attached log files from two exemplar subjects below, also.
I’d appreciate if you might help me. Juhyoung.
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