isxconcat-sess creates the files that you pass to mri_glmfit (ie, multi-frame volumes and/or surfaces where each frame is a subject). Something like:
AVG08/Analyse_Simple_Confidence/High_confidence__Low_confidence_vs_HSF_gabor__LSF_gabor/tal.ces.nii
You can then use this as input to mri_glmfit passing it with the --y option. You can get more help from the FS FAST tutorial. Go to the wiki, type "isxconcat-sess" in the Search field, then hit the "Text" button.
doug
On Wed, 14 Oct 2009, Maximilien Chaumon wrote:
Hi freesurfers,
I've been running isxconcat-sess with this line
chaumon[/homes/11/chaumon/data] (nmr-std-env) isxconcat-sess -sf subjlist.txt -analysis Analyse_Simple_Confidence -c High_confidence__Low_confidence_vs_HSF_gabor__LSF_gabor -o AVG08
I was expecting to find a directory called osgm in the specified analysis directory with which I could feed data to mri_glmfit, but I can't find it. /homes/11/chaumon/bomba/AVG08/Analyse_Simple_Confidence/High_confidence__Low_confidence_vs_HSF_gabor__LSF_gabor
The log file is attached. I don't find "error" in the text.
Where am I wrong? Is there any mri_glmfit-sess like script somewhere? It's going to be pretty tough to find each parameter to feed to mri_glmfit...
Thanks, Max