mri_vol2vol on the ribbon.mgz should do the trick. Use bbregister to register the T2 to the surfaces
cheers Bruce
On Sat, 27 Feb 2016, Ali Radaideh wrote:
Dear FreeSurfer Experts,
We have two high resolution datasets (T1 and T2* images). T2* is co-registered to the T1 volume. The T1 volume was processed in freesurfer using the recon-all and we want to use the segmented cortex (by freesurfer) as a mask to extract the cortex from the T2* volume.
Would it be possible, please, to let us know which command to use to transfer the segmented cortex to the native space of T1 and T2*?.
Many thanks in advance, Ali
-- Ali M. Al-Radaideh. PhD Head of Department of Medical Imaging Vice Dean of the Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jo webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=