Re: [Freesurfer] lh.orig.nofix vs. lh.white

(Sorry -- inadvertently hit a key that triggered the "send" function. Here's the final version of the previous message:)

Hi everyone,

I've been trying to go through the various steps described on the page:

http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable

and I'm trying to understand part of the -autorecon2 section, and in particular,

1) how the lh.orig.nofix file that is produced by the end of the -tessellate subsection is different from the the lh.white file that is produced by the -white subsection, and

2) how the area and curvature files produced by the command mris_smooth lh.orig.nofix lh.smoothwm.nofix would differ those produced by the -white subsection.

Thanks in advance for your help, David Romano

On Wed, Sep 4, 2013 at 4:07 PM, David Romano dromano@stanford.edu wrote:

Hi everyone,

I've been trying to go through the various steps described on the page:

http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable

and I'm trying to understand part of the -autorecon2 section, and in particular,

1. how the lh.orig.nofix file that is produced by the end of the

-tessellate subsection is different from the the lh.white file that is produced by the -white subsection, and

2. whether the area and curvature files produced by the command