Re: [Freesurfer] Run script

you have to be in the same folder as lh.Yeo2011_17NetworksConfidence_N1000.mgz

On 8/22/2021 5:40 PM, Haley Park wrote:

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Hello,

I got a response to a question I asked earlier to run the following script:

mri_convert lh.Yeo2011_17NetworksConfidence_N1000.mgz --reorder 2 1 3 lh.Yeo2011_17NetworksConfidence_N1000.reordered.mgz How would I run this? I tried running freesurfer in terminal and typing the above in but got an error, ":could not open file"

Maybe I can compile an .sh file and run it but I'm not sure what to write in it

Thank you for the help! Haley

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