Dear FreeSurfer users,
I have recently developed two Matlab packages and made them publicly available, which I'd like to share with you. They include source codes and compiled binaries, and are GPU-compatible.
The first one is for deformable registration of same-contrast images, using the mid-space-independent https://authors.elsevier.com/a/1UgxH3lc~q-QUS approach.
www.nitrc.org/projects/msi-register http://www.nitrc.org/projects/msi-register
The second one is for diffusion-weighted MRI processing. It includes a pipeline for computation of the q-ball Orientation Distribution Function in Constant Solid Angle (CSA-ODF http://www.ncbi.nlm.nih.gov/pubmed/20535807 ), in addition to Hough-transform http://www.ncbi.nlm.nih.gov/pubmed/21376655 based tractography.
www.nitrc.org/projects/csaodf-hough http://www.nitrc.org/projects/csaodf-hough
These are first releases. I highly appreciate any feedback.
Best regards,
Iman Aganj
Assistant Professor of Radiology
Harvard Medical School
Assistant in Neuroscience
Athinoula A. Martinos Center for Biomedical Imaging
Massachusetts General Hospital