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Hi Bruce,
The nu.mgz input into mri_normalize looks ok to me (screenshot attached), as does the talairach registration.
Corinna
On Wed, May 5, 2021 at 5:39 PM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:
Can you take a look at the volume that was the input to mri_normalize and see if it looks ok? And check the talairach
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Corinna Bauer *Sent:* Wednesday, May 5, 2021 5:25 PM *To:* Mailing Freesurfer List freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] error at 3d normalization pass 1 of 2 stage with MP2RAGE data
External Email - Use Caution *Hello all,
I am trying to run recon-all on MP2RAGE data from Philips and it exits with errors at this point:
3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points
error: No such file or directory error: MRInormFindControlPoints failed Command exited with non-zero status 253
The log file is attached. The input file was the MPRAGE generated on the scanner console (i.e. not the T1 map). I attached a screenshot of orig.mgz viewed in fsleyes. Any thoughts?
Thanks!
Corinna
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