If you just want to check the orientation, then you can run mri_info. It will not tell you whether the orientation is correct or not, but neither will fslhd doug
On 6/19/13 11:18 AM, Bruce Fischl wrote:
Hi Brigette,
not sure how you could do this except visually. Bring the images up and verify that the directions that we specify are correct (although of course this isn't possible for L/R unless you have some type of external fiducial marker like a vitamin E tablet)
cheers Bruce On Wed, 19 Jun 2013, Brigitte Dahmen wrote:
Dear Freesurfer experts,
is there a command in Freesurfer to check for correct orientation (LAS vs. PSR) of T1 images (similar to "fslhd" in FSL)?
Thank you very much! Brigitte
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer