9 Oct
2017
9 Oct
'17
5:01 p.m.
what is the dimension of the rawavg.mgz? what is the dimension of the output? What is the terminal output?
On 10/8/17 1:51 AM, Fereshte wrote:
Dear Experts, I've run " mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-rawavg.mgz --regheader aseg.mgz" as explained, however i can't see any changes in dimension in comparision to the the predefined aseg.mgz. I'd appreciate your help with it. Thanks for your attention. I'm looking forward to your reply.
On Wed, Oct 4, 2017 at 5:01 PM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
This is a standard operation in FS to change the volume to 256^3, 1mm^3. If you need to get the data back into the native space, see https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat <https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat> On 10/4/17 3:31 AM, Fereshte wrote:Dear Experts, I've made some volumes from aseg.mgz using mri_binarize and then used mri_convert to make nii files. But when i open these files using Mricro i see the original dimension of the image has changed ( 181,217,181 to 256,256,256). I have no idea what the problem is. I'd appreciate your help. Many thanks in advance Best _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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