Re: [Freesurfer] Fwd: FW: flipped orientation in tksurfer and tkmedit

Can you tar up that subject and drop it to me at our file drop (url at the end of this email). doug

Ilana Hairston wrote:

from my research assistant -

On XXX the coordinates on the right side of the screen in tkmedit always start with a negative number.

So that part is correct.

Our problem is that the brain is not flipped - if freesurfer displays radiological and SPM8zero displays neurological, then when you compare the 2 side by side, the brains should be mirror images. Ours are not, they are the same.

Make sense?

On Tue, Sep 20, 2011 at 2:26 PM, Ilana Hairston <hairstonster@gmail.com mailto:hairstonster@gmail.com> wrote:

could you check this?
this a followup on my original email after looking at 110???yl
with Barbara and Steve.
thanks
i.

On Tue, Sep 20, 2011 at 2:23 PM, Douglas N Greve
<greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

    What are the talairach coords for the left hemi? The first
    coordinate (x) should always be negative.
    doug

    Ilana Hairston wrote:

        Hi Doug,
        No, we had the lh loaded in tksurfer, and when saving a
        point it showed up on the _left_ in tkmedit (i.e., the
        right side).
        thanks
        ilana


        On Tue, Sep 20, 2011 at 11:34 AM, weiland, Barbara
        <bweiland@med.umich.edu <mailto:bweiland@med.umich.edu>
        <mailto:bweiland@med.umich.edu
        <mailto:bweiland@med.umich.edu>>> wrote:


           -----Original Message-----
           From: freesurfer-bounces@nmr.mgh.harvard.edu
        <mailto:freesurfer-bounces@nmr.mgh.harvard.edu>
           <mailto:freesurfer-bounces@nmr.mgh.harvard.edu
        <mailto:freesurfer-bounces@nmr.mgh.harvard.edu>>
           [mailto:freesurfer-bounces@nmr.mgh.harvard.edu
        <mailto:freesurfer-bounces@nmr.mgh.harvard.edu>
           <mailto:freesurfer-bounces@nmr.mgh.harvard.edu
        <mailto:freesurfer-bounces@nmr.mgh.harvard.edu>>] On Behalf Of
           Douglas N Greve
           Sent: Wednesday, September 14, 2011 6:10 PM
           To: Ilana Hairston
           Cc: freesurfer@nmr.mgh.harvard.edu
        <mailto:freesurfer@nmr.mgh.harvard.edu>
           <mailto:freesurfer@nmr.mgh.harvard.edu
        <mailto:freesurfer@nmr.mgh.harvard.edu>>

           Subject: Re: [Freesurfer] flipped orientation in
        tksurfer and tkmedit

           When you say on the "right hemi in tkmedit" do you mean
        on the
           right side of the image (which is the left side of the
        brain)?
           doug

           Ilana Hairston wrote:
           > Hi there,
           > We recently had a problem that tksurfer and tkmedit
        were flipped
           > relative to each other.  Basically, when saving a
        point in the left
           > hemisphere in tksurfer it it loaded in the right
        hemisphere in
           tkmedit.
           > Any ideas how this could have happened?
           > Thanks
           > ilana
           >
           >
           >
           > --
           >> ******************************
           >> Ilana Hairston ,PhD
           >> Research Assistant Professor
           >> 4250 Plymouth Rd. (rm 2439)
           >> Psychiatry Department, Addiction Research Center
        University of
           >> Michigan, Ann Arbor MI 48109-2700
           >> Tel: 734-232-0232 <tel:734-232-0232>
        <tel:734-232-0232 <tel:734-232-0232>>; Mobile:
        650-906-8449 <tel:650-906-8449>
           <tel:650-906-8449 <tel:650-906-8449>>

           >>
           >> ********************
           >> Reminder: Women do 66% of the work worldwide, earn
        10% of the
           income,
           >> and own 1% of the world's property
           >
           >
           >
           >

         ----------------------------------------------------------------------
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           --
           Douglas N. Greve, Ph.D.
           MGH-NMR Center
           greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
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        -- 

            ******************************
            Ilana Hairston ,PhD
            Research Assistant Professor
            4250 Plymouth Rd. (rm 2439)
            Psychiatry Department, Addiction Research Center
            University of Michigan, Ann Arbor MI 48109-2700
            Tel: 734-232-0232 <tel:734-232-0232>; Mobile:
            650-906-8449 <tel:650-906-8449>

            ********************
            Reminder: Women do 66% of the work worldwide, earn 10%
            of the income, and own 1% of the world's property



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    -- 
    Douglas N. Greve, Ph.D.
    MGH-NMR Center
    greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    Phone Number: 617-724-2358 <tel:617-724-2358> Fax:
    617-726-7422 <tel:617-726-7422>

    Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>




-- 

...

******************************
Ilana Hairston ,PhD
Research Assistant Professor
4250 Plymouth Rd. (rm 2439)
Psychiatry Department, Addiction Research Center
University of Michigan, Ann Arbor MI 48109-2700
Tel: 734-232-0232; Mobile: 650-906-8449

********************
Reminder: Women do 66% of the work worldwide, earn 10% of the
income, and own 1% of the world's property

--

...

---

Ilana Hairston ,PhD Research Assistant Professor 4250 Plymouth Rd. (rm 2439) Psychiatry Department, Addiction Research Center University of Michigan, Ann Arbor MI 48109-2700 Tel: 734-232-0232; Mobile: 650-906-8449

---

Reminder: Women do 66% of the work worldwide, earn 10% of the income, and own 1% of the world's property

---

---

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