Each subject needs to be processed separately. You will need submit 24 recon-all.
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Dunia A Alhamad Sent: Tuesday, November 21, 2023 12:00 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Errors in recon-all command
External Email - Use Caution What if I had 24 subjects. Should I specify the name for each one in the line ?
Dunia
On Tue, Nov 21, 2023 at 4:52 PM Huang, Yujing <YHUANG43@mgh.harvard.edumailto:YHUANG43@mgh.harvard.edu> wrote: This is your recon-all submitted
“/Applications/freesurfer/7.4.1/bin/recon-all -s I12250_MP-RAGE_20060321115220_3 -i I12250_MP-RAGE_20060321115220_3.nii -qcache”
Add ‘-all’ to the line.
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Dunia A Alhamad Sent: Tuesday, November 21, 2023 11:50 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Errors in recon-all command
External Email - Use Caution Could you please explain more ho to specify all in recon-all command ?
Dunia
On Tue, Nov 21, 2023 at 4:48 PM Huang, Yujing <YHUANG43@mgh.harvard.edumailto:YHUANG43@mgh.harvard.edu> wrote: It looks like you don’t have data processed. Specify ‘-all’ on recon-all on command line.
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Dunia A Alhamad Sent: Tuesday, November 21, 2023 10:58 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Errors in recon-all command
External Email - Use Caution Hello Freesurfer Developers
I'm attempting to apply preprocess and segment to my data that consist of 24 subjects by recon-all syntax, as described on the FreeSurfer wiki on macOs software MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/recon-allhttps://secure-web.cisco.com/1sL0UR9IcjyzN-iiFPRBpUbos_zcdbT2W0RQcJ-3jMPXPBbG7t5-6HgMR60s4YWqde4tZa0XWjtkT0aWl3XybyhjThRfDIZmH8oNIZTQHT3KJDNpBj1DUZ6PKEZrrygdbT1DPTNtfO_zUn04IsLpbI6O57RcgvpVsXEx8ujYU-9-eFN0mWsVDj6gaP-ZccrPky_ruv3wCEiKCyGbSpPLpWXig3WAycCHA4_N_rPef9kRpg4gEFbLVjmjTPA3yx66OOHSaNacYpeFWBHZKyZbf4aKwJBcw2IPYCBLyjn1TOfQIc4V1h7skqAUUfgGHtlo3I_FNzpbevSUMMmOhMJUuzQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frecon-all
ERROR: cannot find /Users/duniaalhamad/Desktop/subjects/I83870_MP-RAGE_20071127095752_2/surf/lh.thickness
Darwin dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct 9 21:28:31 PDT 2023; root:xnu-10002.41.9~6/RELEASE_ARM64_T8112 arm64
1) freesurfer version: freesurfer-macOS-darwin_x86_64-7.4.1
2) platform: bash terminal
3) log file
Tue Nov 21 15:50:35 GMT 2023 cd /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3 setenv SUBJECTS_DIR /Users/duniaalhamad/Desktop/subjects /Applications/freesurfer/7.4.1/bin/recon-all -s I12250_MP-RAGE_20060321115220_3 -i I12250_MP-RAGE_20060321115220_3.nii -qcache
subjid I12250_MP-RAGE_20060321115220_3 setenv SUBJECTS_DIR /Users/duniaalhamad/Desktop/subjects FREESURFER_HOME /Applications/freesurfer/7.4.1 Actual FREESURFER_HOME /Applications/freesurfer/7.4.1 build-stamp.txt: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 Darwin dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct 9 21:28:31 PDT 2023; root:xnu-10002.41.9~6/RELEASE_ARM64_T8112 arm64 cputime unlimited filesize unlimited datasize unlimited stacksize 8176 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 1333
PhysMem: 7547M used (1397M wired, 2612M compressor), 77M unused.
######################################## program versions used 7.4.1 (freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460) 7.4.1
ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.4.1 TimeStamp: 2023/11/21-15:50:36-GMT BuildTime: Jun 14 2023 00:15:19 BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User: duniaalhamad Machine: 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dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk Platform: Darwin PlatformVersion: 23.1.0 CompilerName: Clang CompilerVersion: 12.0.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@gust.nmr.mgh.harvard.edumailto:nicks@gust.nmr.mgh.harvard.edu (x86_64-apple-darwin11.4.2) on 2015-06-19 at 15:37:08 ####################################### GCADIR /Applications/freesurfer/7.4.1/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /Applications/freesurfer/7.4.1/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3 \n mri_convert /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3.nii /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3/mri/orig/001.mgz \n mri_convert /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3.nii /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3/mri/orig/001.mgz reading from /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3.nii... TR=8.98, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3/mri/orig/001.mgz... #-------------------------------------------- #@# Qdec Cache preproc lh thickness fsaverage Tue Nov 21 15:50:39 GMT 2023 /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3/surf \n mris_preproc --s I12250_MP-RAGE_20060321115220_3 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh \n nsubjects = 1 ERROR: cannot find /Users/duniaalhamad/Desktop/subjects/I12250_MP-RAGE_20060321115220_3/surf/lh.thickness Darwin dyn145223.shef.ac.ukhttp://secure-web.cisco.com/17ssZVEmpLNHt-CxwXxe9utDZsBI2l_rJnTwKTg_6x0x-K6FKabQXiCAiOpJJ3jXRp7-Q4ZXIaOAjfwriBhG0_AJuohS3d_EghKyRbyUGq0Bea09MEYuszpRjdEVKFsZyp3h5e2t9K_SQci1CBIuW-awzsKbzuOwx9I_VWm8erPdUnQ5xndc2NI2S8FRk77pB9IGhsG-Q8d1uX-bbUhQ33MDOTgaou2GKHocaMySmZQ-y3hTFZg27Wbe--2ykviYsq8ryJ1M0qSInI05pH-bYMypcAgqH4UQw3pKon2pNOsJF5o_ghlyvZzNdNZDIPk-xpvllr1akdqDcrMm7X8OpEg/http%3A%2F%2Fdyn145223.shef.ac.uk 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct 9 21:28:31 PDT 2023; root:xnu-10002.41.9~6/RELEASE_ARM64_T8112 arm64
recon-all -s I12250_MP-RAGE_20060321115220_3 exited with ERRORS at Tue Nov 21 15:50:39 GMT 2023
To report a problem, see MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://surfer.nmr.mgh.harvard.edu/fswiki/BugReportinghttp://secure-web.cisco.com/1kSmtgzR_pxmyG0Pcf2UmG3i7fQr9HeDya5uym7dX6z6tGZdMuhAr9QAO3NNFaL7EqiWYP3ahWxhaiiv5tbGWQ0AXo2G1smogNP5-5iWwGZQWXQhiA2kHfRzjeDr53nNN6jkHQNUbqwyTgQdhhGsviPdSNnu0IedSruBqCCVVn9tD9qqb-1l_dvLt_VKy-LeuPLheMwTDPkd7Y8D00QuxSFTVFN1eWjVMh4owHpADK6tRvs0RmLF2aXjKlrBm99PPU-qagrrset7G1i0yJVWYxTfUJnFzWssLyDDZQ4YFTCn7qQANuztgiuY8CrrxJWePWp9PbtaLrFxBsRYiJV9G_g/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting
Thank you -- Dunia Ahmad Al-Hamad PhD Student Sheffield Institute of Translational Neuroscience (SiTraN) The University of Sheffield 385a Glossop Road Sheffield S10 2HQ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1NQg2j8HWS3jCm0B8901qkM99ZmZJuC2vU7Q65ZdXTmM8BmWEBsWge6OK831nzBQsOoAI8dEKP4VOemGu6aH6oEbkjJ6PC6inDcZASwNfdIJ2kHQ5Nzmyvv3AuO9ptJQqLv1HMMRaBm0iLfMhDMMdBIdt9jxxsPX3X-mHS3LlnvZReNKZtiKGlBbdNOCMS0purQpNCImlJBDwLpq8YfeP-dS5VY3w8UAZleG3QOpGQDaayuBuxRcT24kPDSgqW0JCLZc9zbh0NexUuCoiLB-8ehYmyIDXoIzYfZZ70rFGUdwFnnOos8JopkzsAfGBFajtaJ04iy7cQhNf2BveVmotuw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/compliancelinehttps://secure-web.cisco.com/1jVAH8eFHnAHOHGY9ZAXcOInhwTeJXT0vUl9orYtEPiaRJSBebQLUWKDGRy-c5Yk-q3_iBScfIHOoVmwIPzcamocSZPXTCzzhfTVd9iKtPM9L-P67if3_KhGPeHIa7QNIaEYWUa6lWh8AKMNUbDUBjkOb-vB26Mrf_MgrFW4olZMUh0B-33rKv7uJE4v8Umrg45geSY0kr2piZaR80uM9fHTV0TSrY-hs_LQvxB_dfJHFgouW8V3FZXBMQ5KpRfN94cDMol6SHpXepNB0fLX1Sv3QEk655m1scOU6quVOBeJyBYuSpuNhK5x1rxfkRXA0mECgpuO5ZsTAxJeds9_SUQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/compliancelinehttps://secure-web.cisco.com/1jVAH8eFHnAHOHGY9ZAXcOInhwTeJXT0vUl9orYtEPiaRJSBebQLUWKDGRy-c5Yk-q3_iBScfIHOoVmwIPzcamocSZPXTCzzhfTVd9iKtPM9L-P67if3_KhGPeHIa7QNIaEYWUa6lWh8AKMNUbDUBjkOb-vB26Mrf_MgrFW4olZMUh0B-33rKv7uJE4v8Umrg45geSY0kr2piZaR80uM9fHTV0TSrY-hs_LQvxB_dfJHFgouW8V3FZXBMQ5KpRfN94cDMol6SHpXepNB0fLX1Sv3QEk655m1scOU6quVOBeJyBYuSpuNhK5x1rxfkRXA0mECgpuO5ZsTAxJeds9_SUQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> .
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