Hi all,
I have a recon that looks like it ran (almost) to completion, but then threw a permissions error in the stdout and directed me to the log. I can't determine what the issue might have been. I've attached the .log file as well as .error and .done files. I'll also paste the end of the stdout below because for some reason the permissions error was not captured by the log file. I appreciate any insight anyone can give.
Best, John
end of stdout:
tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied setting seed for random number generator to 1234 total integrated curvature = 26.759*4pi (336.266) --> -26 handles ICI = 173.9, FI = 1548.0, variation=24893.111 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. @#@FSTIME 2022:02:17:09:34:06 mris_curvature N 4 e 1.41 S 0.03 U 1.30 P 94% M 157860 F 0 R 20801 W 0 c 20 w 53 I 0 O 2176 L 1.29 1.25 1.20 @#@FSLOADPOST 2022:02:17:09:34:07 mris_curvature N 4 1.29 1.25 1.20 Linux erso.nmr.mgh.harvard.edu 4.18.0-365.el8.x86_64 #1 SMP Thu Feb 10 16:11:23 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied recon-all -s sub-LALM61_ses-LALM61 exited with ERRORS at Thu Feb 17 09:34:08 EST 2022 tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied
tee: /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log: Permission denied For more details, see the log file /autofs/vast/bandlab/studies/kyoto_preliminary/data/derivatives/freesurfer/sub-LALM61_ses-LALM61/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting BugReporting - Free Surfer Wikihttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting top. Bug Reporting. Submitting a request for help . When submitting a request for help with your problems please be aware that the developers will try and repeat your ... surfer.nmr.mgh.harvard.edu