Thanks! I will take your advice and start to learn it. I appreciate your help so much!!
Elissa
On Tue, Mar 22, 2016 at 6:28 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
something like:
set SUBJECTS = (subject1 subject2 ... subject60) foreach s ($SUBJECTS) foreach hemi (lh rh) mris_anatomical_stats -l $hemi.BA45.label $s $hemi end end
definitely worth taking the time to learn! It will save you endless amounts of time in the longrun and it's an extremely useful skill We have pointers to linux primers if you want to look at one.
cheers Bruce
On Tue, 22 Mar 2016, Elissa Ash wrote:
Thanks! I am a newbie so I think it would take me longer to learn how to
write the script then to just do it one at a time! :)
On Tue, Mar 22, 2016 at 6:23 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: oh, no, but write a script to do it! That's what unix is for.
On Tue, 22 Mar 2016, Elissa Ash wrote: > Thanks Bruce > I am calculating the thickness for a given ROI (rh.BA45.label) and comparing it > across subjects and it is tedious to have to type in the command separately each time > (~60 subjects). I was hoping that there was a way to inputmultiple subjects at once. > That's it. > > Thanks, > Elissa > > On Tue, Mar 22, 2016 at 5:44 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: > Hi Elissa > > not really. What would you want it to do? There are tools for tabulating > the output of mris_anatomical_stats across subjects, if that's what you > are trying to do > > cheers > Bruce > On Tue, 22 Mar 2016, Elissa Ash wrote: > > > > > Dear experts, > > > > Is there any way to run the mris_anatomical_stats command on more than > one subject at > > a time? > > > > Thanks, > > Elissa > > -- > > Elissa Ash, MD, PhD > > Director, Center for Memory and Attention Disorders > > Department of Neurology > > Tel Aviv Sourasky Medical Center > > > > 6 Weizmann St. > > Tel Aviv 64239, Israel > > 972-3-6973698 > > fax: 972-3-695-0365 > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > > -- > Elissa Ash, MD, PhD > Director, Center for Memory and Attention Disorders > Department of Neurology > Tel Aviv Sourasky Medical Center > > 6 Weizmann St. > Tel Aviv 64239, Israel > 972-3-6973698 > fax: 972-3-695-0365 > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Elissa Ash, MD, PhD Director, Center for Memory and Attention Disorders Department of Neurology Tel Aviv Sourasky Medical Center
6 Weizmann St. Tel Aviv 64239, Israel 972-3-6973698 fax: 972-3-695-0365
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.