Yes it does. I ran -cortribbon first then reran autorecon-all (instead of -autorecon2). Now it finished "without error". However I'm still confused why do I get the error when I run -autorecon2 (a freesurfer newbie over here)
Best, Gloria
Da: "Douglas Greve" greve@nmr.mgh.harvard.edu A: "freesurfer" freesurfer@nmr.mgh.harvard.edu Inviato: Mercoledì, 6 settembre 2017 20:02:22 Oggetto: Re: [Freesurfer] patch for ribbon mgz failure. SAME ERROR
what happens if you run
recon-all -s subject -cortribbon does it create the ribbon.mgz?
On 9/6/17 7:53 AM, Maria Gloria Rossetti wrote:
Hi Doug,
As you suggested, I copied the mri_segstats patch (mri_segstats.centos6_x86_64 because my system is centos6) to my freesurfer/bin location and reran the pipeline. However, I'm getting the same issue. Autorecon2 seems unable to create the ribbon.mgz file. Do you have any other suggestions for fixing this error? Attached you can find the recon-all.log file
Thanks, Gloria
Da: "Douglas N Greve" greve@nmr.mgh.harvard.edu A: "freesurfer" freesurfer@nmr.mgh.harvard.edu Inviato: Martedì, 5 settembre 2017 18:09:31 Oggetto: Re: [Freesurfer] patch for ribbon mgz failure
Use the mri_segstats from this URL that is appropriate for your system (eg, if you're running centos6, the download that patch and copy it to mri_segstats)
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/
On 08/30/2017 06:32 AM, Maria Gloria Rossetti wrote:
Hi freesurfer team,
I got the same error described here: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg45983.html and, as suggested, I tried to copy in $FREESURFER_HOME/bin/ the patch from ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats but I cannot find the URL. I also found some patches here : https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/ but I don't know which one I'm supposed to use.
Any advice?
Thanks! Gloria
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