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I'm reposting my questions that I have done some week ago because without your helpfulness is impossible to go ahead with my analysis.
1- I have installed dev version. I have run the segmentThalamicNuclei.sh but .stats file has been not produced in any subjects.
I have also try to re-run recon-all but without success.
2 - I have used FS-FAST previously. However, when I use the thalami segmentation as seed
fcseed-config -segid 8103 -fcname L_AV.dat -fsd rest -mean -cfg mean.L_AV.config fcseed-sess -sf sessid -cfg mean.L_AV.config
I obtain the error listed below:
Voxel Volume is 36.3469 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation
Reporting on 0 segmentations
Using PrintSegStat
Computing spatial average of each frame
ERROR: no voxels found in segmentation
Please could you give me can help?
Thanks
Stefano