Yes, that should work. You can create a mask by breaking the annotation into labels (mri_annotation2label), then converting the label into a binary mask (mri_label2label with --mask option), then mri_binarize --i lh.thickness --mask youmask.mgh --o lh.thickness.masked.mgh
On 07/30/2018 01:47 AM, N Saf wrote:
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Dear Freesurfer Experts,
I wonder how can I show the cortical thickness surface on just one region of my interest in Freeview. assume that I want to see the thickness surface of one of the regions in DKTatlas. does it work if I make a binary mask of that specific region on aparcDKTatlas.annot and then multiply it to the ?h.thickness surface ?? any help will be appreciated.
Best Regards, Nazanin
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