Hi Luke,
you can use mri_mc (marching cubes) on any of the labels to generate a surface if you want. The list of labels is in $FREESURFER_HOME/FreeSurferColorLUT.txt
cheers Bruce
On Wed, 22 Dec 2010, Luke Bloy wrote:
Hello,
I'm new to freeSurfer and just starting to look around so I apologize if this question is a bit naive.
When I look at segmentation results, that include deep brain nuclei (thalamus etc) I see that they are all contained inside of the white matter surface. is there away to edit the surface so that these boundaries are represented?
I imagine that this would change the topology of the WM region thus it might be difficult, Is there away to generate surfaces form these regions on there own?
Thanks Luke _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer