Hi Dave,
001.mgz in <SUBJECT_ID>/mri/orig/ looks okay but 002.mgz looks strange, which I think is the reason for what you are seeing in T1.mgz. Did you collect 2 runs for structurals. Can you point me to the dicom files for this dataset or the scan log.
Sita.
On Wed, 9 Jun 2010, Dave Brohawn wrote:
Hello,
I keep seeing a snowy background for my T1 structural images.
Here is my info:
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4-stable-v4.5.0-20100311
RedHat release: CentOS release 5.3 (Final)
Kernel info: Linux 2.6.18-128.7.1.el5 i686
NMR Center info (/space/freesurfer exists):
machine: seymour
SUBJECTS_DIR: /space/seymour/1/users/folate_subjects/
PWD: /space/seymour/1/users/folate_subjects
ssh seymour setenv SUBJECTS_DIR /space/seymour/1/users/folate_subjects/ cd /space/seymour/1/users/folate_subjects
The command I entered and one of the subjects we are seeing this with -
tkmedit-sess -s FB0011089A -a fmcsm5_functionals -c Cond1vFix
Is this a problem? What can I do to fix this?
Dave Brohawn
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