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Dear Alison,
Could you copy&paste the full command line that you are using to run recon-all?
Best,
Tim
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
On 11/10/2021 4:48 PM Alison McDonnell amcdonn8@tcd.ie wrote:
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when i run recon all it creates all the subfolders but they're empty. the only thing that is actually generated is orig.mgz and rawavg.mgz in the mri subfolder. i didn't get any errors when running recon all so was hoping someone could shed some light on this.
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