Re: [Freesurfer] mri_convert: IMA

try adding:

--in_type siemens_dicom

On Mon, 2007-09-24 at 14:41 -0400, Nurunisa Neyzi wrote:

Hi, I am getting an error message while trying to convert the SIEMENS IMA to MGZ:

siemensRead(): file rows (30067) not divisible by image rows (18771)

It looks like i managed to do a similar conversion before, so I wonder if there is something I need to add to the command line for this special case that I forget?

thanks!

On 9/23/07, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Martin,

    you can do this with mri_convert using -rl
    $SUBJECT_ID/mri/orig/001.mgz
    (reslice like this volume) and -rt nearest (resample type
    nearest neighbor)
    I think. Check the help if this is wrong. It will need to
    resample though. 

    cheers,
    Bruce


    On Sun, 23 Sep 2007, Martin Kavec
    wrote:

    > Hi,
    >
    > how can I map the aparc+aseg.mgz back to
    $SUBJECT_ID/mri/orig/001.mgz, but
    > without suffering from interpolation? 
    >
    > Thanks,
    >
    > Martin
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