Hi All,
I've got from IBSR (Internet Brain Segmentation Repository) MR images and their subcortical structures segmented manually. The segmented images are saved in Outline (.OTL) format. How could I convert from .OTL to .IMG or .NII (Analyze) format using mri_convert? Are there any examples? I would appreciate any help.
There are one image to each of image slice, as shown bellow:
IBSR_01_seg_18.otl IBSR_01_seg_46.otl IBSR_01_seg_73.otl IBSR_01_seg_100.otl IBSR_01_seg_19.otl IBSR_01_seg_47.otl IBSR_01_seg_74.otl IBSR_01_seg_101.otl IBSR_01_seg_20.otl IBSR_01_seg_48.otl IBSR_01_seg_75.otl IBSR_01_seg_102.otl IBSR_01_seg_21.otl IBSR_01_seg_49.otl IBSR_01_seg_76.otl IBSR_01_seg_103.otl IBSR_01_seg_22.otl IBSR_01_seg_4.otl IBSR_01_seg_77.otl IBSR_01_seg_104.otl IBSR_01_seg_23.otl IBSR_01_seg_50.otl IBSR_01_seg_78.otl IBSR_01_seg_105.otl IBSR_01_seg_24.otl IBSR_01_seg_51.otl IBSR_01_seg_79.otl IBSR_01_seg_106.otl IBSR_01_seg_25.otl IBSR_01_seg_52.otl IBSR_01_seg_7.otl IBSR_01_seg_107.otl IBSR_01_seg_26.otl IBSR_01_seg_53.otl IBSR_01_seg_80.otl IBSR_01_seg_108.otl IBSR_01_seg_27.otl IBSR_01_seg_54.otl IBSR_01_seg_81.otl IBSR_01_seg_109.otl IBSR_01_seg_28.otl IBSR_01_seg_55.otl IBSR_01_seg_82.otl IBSR_01_seg_10.otl IBSR_01_seg_29.otl IBSR_01_seg_56.otl IBSR_01_seg_83.otl IBSR_01_seg_110.otl IBSR_01_seg_2.otl IBSR_01_seg_57.otl IBSR_01_seg_84.otl IBSR_01_seg_111.otl IBSR_01_seg_30.otl IBSR_01_seg_58.otl IBSR_01_seg_85.otl IBSR_01_seg_112.otl IBSR_01_seg_31.otl IBSR_01_seg_59.otl IBSR_01_seg_86.otl IBSR_01_seg_113.otl IBSR_01_seg_32.otl IBSR_01_seg_5.otl IBSR_01_seg_87.otl IBSR_01_seg_114.otl IBSR_01_seg_33.otl IBSR_01_seg_60.otl IBSR_01_seg_88.otl IBSR_01_seg_115.otl IBSR_01_seg_34.otl IBSR_01_seg_61.otl IBSR_01_seg_89.otl IBSR_01_seg_116.otl IBSR_01_seg_35.otl IBSR_01_seg_62.otl IBSR_01_seg_8.otl IBSR_01_seg_117.otl IBSR_01_seg_36.otl IBSR_01_seg_63.otl IBSR_01_seg_90.otl IBSR_01_seg_118.otl IBSR_01_seg_37.otl IBSR_01_seg_64.otl IBSR_01_seg_91.otl IBSR_01_seg_119.otl IBSR_01_seg_38.otl IBSR_01_seg_65.otl IBSR_01_seg_92.otl IBSR_01_seg_11.otl IBSR_01_seg_39.otl IBSR_01_seg_66.otl IBSR_01_seg_93.otl IBSR_01_seg_120.otl IBSR_01_seg_3.otl IBSR_01_seg_67.otl IBSR_01_seg_94.otl IBSR_01_seg_12.otl IBSR_01_seg_40.otl IBSR_01_seg_68.otl IBSR_01_seg_95.otl IBSR_01_seg_13.otl IBSR_01_seg_41.otl IBSR_01_seg_69.otl IBSR_01_seg_96.otl IBSR_01_seg_14.otl IBSR_01_seg_42.otl IBSR_01_seg_6.otl IBSR_01_seg_97.otl IBSR_01_seg_15.otl IBSR_01_seg_43.otl IBSR_01_seg_70.otl IBSR_01_seg_98.otl IBSR_01_seg_16.otl IBSR_01_seg_44.otl IBSR_01_seg_71.otl IBSR_01_seg_99.otl IBSR_01_seg_17.otl IBSR_01_seg_45.otl IBSR_01_seg_72.otl IBSR_01_seg_9.otl
Thank you, Flavio