[Freesurfer] Freeview problem: ROIs showing in wrong slice when loaded with certain volumes

Hello, I am having an issues with freeview ROIs. When I use the command line to load the orig and the ROIs by themselves they display correctly, however when I display the orig volume and the volume versions of the ROIs- the label ROIs suddenly change to be in the wrong plane. I have done this same thing before and this hasn’t happened. Right now I am having to load just the orig and ROI labels then run the command within freeview to load the label volumes to get it to display all the images at the same time correctly. I would like to do it all in one command line at the same time.

Thanks,

Sara Sims Graduate Research Fellow University of Alabama at Birmingham Department of Psychology 205-975-4060 snolin@uab.edu