Hi Ali
can you send us your full command line, the full screen output and the recon-all.log file that should have been generated in the subject's scripts dir?
cheers Bruce On Fri, 6 Oct 2017, Ali Radaideh wrote:
Dear FreeSurfer Experts,
I have just launched a new project and collected new T1 weighted images (as my previous ones) and started processing them using FreeSurfer. Unfortunaely non of them works with FreeSurfer. When I run recon-all -autorecon-all -s subjecname, I get the following error:
#@# Talairach Fri Oct 6 09:20:02 EEST 2017 /home/ali/processing/Farah_hospital/MR.BASHEER_IGIAM/mcropped_noor/mri
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
Linux ali-XPS-L501X 4.8.0-54-generic #57-Ubuntu SMP Wed May 24 10:21:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s mcropped_noor exited with ERRORS at Fri Oct 6 09:20:05 EEST 2017
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I have checked my images and they look fine and they are similar to the ones I have processed a year ago.
I have searched for a solution to this error but unfortunately I did not find any. Could you please help me on this?
Thanks alot in advance,
Ali
-- Ali M. Al-Radaideh. PhD Department of Medical Imaging Faculty of Allied Health Sciences The Hashemite University, Zarqa, Jordan W.phone +962 5 3903333 ext.5422, 5355, 5364 Email: ali.radaideh@hu.edu.jo webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=